Overview | 1. Construct a Basic Heatmap | 2. Cell Properties | 2.1 Cell Shape | 2.2 Cell Size | 2.3 Cell Colours | 2.4 Cell Borders | 2.4.1 Border Masking | 2.5 Cell Text | 3. Data Scaling | 3.1 Scaling Columns | 3.2 Scaling Rows | 4. Bar Plots | 5. Hierarchical Clustering | 5.1 Dendrograms | 5.1.1 Cosine Distance | 5.2 Clustering | 5.2.1 Manual Clustering | 6. Legends | 7. Complex Layouts | 8. Export | 10. Summary
Package: HeatmapR 1.1.0
Dillon Hammill
HeatmapR: Create Heatmaps Using Base Graphics
Provides a lightweight framework for creating high quality, complex heatmaps using base graphics. Supports hierarchical clustering with dendrograms, column and row scaling, cluster sub-divisions, customizable cell colours, shapes and sizes, legends, and flexible layouts for arranging multiple heatmaps. Designed to return plot objects that can be easily arranged with other plots without sacrificing resolution. Methods for hierarchical clustering and distance computations are described in Murtagh and Contreras (2012) <doi:10.1002/wics.53>. Dendrogram visualisation methods are based on the 'ggdendro' package by de Vries and Ripley (2020) <https://CRAN.R-project.org/package=ggdendro>.
Authors:
HeatmapR_1.1.0.tar.gz
HeatmapR_1.1.0.zip(r-4.7)HeatmapR_1.1.0.zip(r-4.6)HeatmapR_1.1.0.zip(r-4.5)
HeatmapR_1.1.0.tgz(r-4.6-any)HeatmapR_1.1.0.tgz(r-4.5-any)
HeatmapR_1.1.0.tar.gz(r-4.7-any)HeatmapR_1.1.0.tar.gz(r-4.6-any)
HeatmapR_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
HeatmapR/json (API)
| # Install 'HeatmapR' in R: |
| install.packages('HeatmapR', repos = c('https://dillonhammill.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dillonhammill/heatmapr/issues
Pkgdown/docs site:https://dillonhammill.github.io
Last updated from:c09079d063. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 123 | ||
| source / vignettes | OK | 153 | ||
| linux-release-x86_64 | OK | 126 | ||
| macos-release-arm64 | OK | 147 | ||
| macos-oldrel-arm64 | OK | 150 | ||
| windows-devel | OK | 92 | ||
| windows-release | OK | 83 | ||
| windows-oldrel | OK | 90 | ||
| wasm-release | OK | 134 |
Exports:heat_mapheat_map_clustheat_map_completeheat_map_customheat_map_layoutheat_map_newheat_map_recordheat_map_resetheat_map_saveheat_map_scale
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a complex heatmap using base graphics | heat_map |
| Perform hierarchical clustering for heatmap | heat_map_clust |
| Indicate when a heatmap is complete and ready for saving | heat_map_complete |
| Create a custom heatmap plot layout | heat_map_custom |
| Arrange multiple heatmaps | heat_map_layout |
| Open a pop-up graphics device for heatmaps | heat_map_new |
| Record a custom heatmap | heat_map_record |
| Reset all heatmap related settings | heat_map_reset |
| Save high resolution images | heat_map_save |
| Scale numeric data prior to constructing heat_map | heat_map_scale |